Application data versions¶
Many of the applications in the RE do not access the data directly, but instead have their own local data stores. This means that there is sometimes a delay in when the data accessed by the applications is updated and there may be differences in the data you can see from different sources.
This table shows the current data version that an RE application or data product is using and when this was last updated:
| Application / data product | 100kGp data version | NHS-GMS data version | COVID-19 data version 1 | |||
|---|---|---|---|---|---|---|
| LabKey | v19 | Oct 2024 | v4 | Aug 2024 | - | |
| The genomes folder | v19 | Oct 2024 | v4 | Aug 2024 | - | |
| Participant Explorer | v18 | Jun 2024 | tbd | - | ||
| Aggregated variant calls (100kGP/COVID-19 | v10 2 | Sep 2020 | - | v4.2 2 | ||
| Somatic aggregated variant calls | v12 2 | Sep 2021 | - | - | ||
| IVA/OpenCGA | v16 | Feb 2023 | - | v5 3 | Jul 2024 | |
| CloudOS S3 | v18 | Apr 2024 | - | v6 | Sep 2023 | |
| CloudOS Cohort browser | v17 4 | - | v5 4 | |||
| CloudOS OMOP | v16 | - | - | |||
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Only available in CloudOS ↩
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Participants from later releases will not be part of these aggregates, however we do provide lists of consented individuals based on current releases in order for researchers to work with this data. ↩↩↩
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COVID-19 data in OpenCGA can only be accessed via the CloudOS Cohort browser. ISARIC, PHOSP and VITT cohorts are not included in OpenCGA. 89.6% of samples in CloudOS are in OpenCGA and at least 79.8% of samples in OpenCGA are in CloudOS with concordant vcf files. ↩
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Structured/Clinical data version. For variant data versions in CloudOS Cohort browser, see IVA/OpenCGA ↩↩