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Genomics England Research EnvironmentΒΆ

ANNOUNCEMENTS

Current data release:


12th February 2024 - CloudOS access in main RE

  • If you are registered for CloudOS access, you can now access it from the RE desktop, and easily transfer files between CloudOS and the workspace filesystem.

7th February 2024 - HPC change

15th January 2024 - How to Guides

  • Check out the new How-to Guides section for end-to-end guides, code books and task-based tutorials.

1st November 2023 - BioMart

  • Ensembl BioMart is now accessible in the RE, both the web interface and the biomaRt R package.

13th Oct 2023 - Updated workflow

  • Structural Variant 3.0 is a complete re-write of the SV/CNV workflow (current version 2.0.1), from WDL/Cromwell to Nextflow DSL2. The workflow now runs in both RE (Helix/HPC) and CloudRE (CloudOS).

14th September 2023 - Update to AggV2 functional annotation data

  • We are pleased to announce that updated functional annotation files have been made available for the AggV2 dataset using VEP 109. For more information on this data, please see https://re-docs.genomicsengland.co.uk/functional_annotation/ and, as always, please do get in touch via the Service Desk if you have any questions.

Getting started How-to guides

Data in the Research Environment Tools in the Research Environment

High Performance Cluster (HPC) Workflows, scripts and containers

Data security and Airlock Training