Genomics England Research EnvironmentΒΆ
ANNOUNCEMENTS
Current data release:
15th April 2024 - Workflow update
Small Variant v2.0.6 moves to data release 18 (main-programme_v18_2023-12-21), uses scratch for intermediate files, uses default singularity cache, uses nextflow version 22.10.5, simplifies standard output (-ansi-log false), and produces nextflow pipeline reports.
15th April 2024 - Bug in rtds table
- There is a bug in the NCRAS radiotherapy table,
rtdsfor 100kGP releases 17 and 18. Approximately 8% of all records in this table are missing dates. This is due to a bug translatingSepin three-letter months to numbered dates. - This will be fixed for release 19, due later in 2024.
15th April 2024 - Participant Explorer update
The Participant Explorer has been updated with 100,000 Genomes data release 18
14th March 2024 - GMS release 3
- The latest release of the Genomic Medicine Service data is now available.
- Transcriptomic data has been released for a subset of rare disease probands in the 100,000 genomes.
12th February 2024 - CloudOS access in main RE
If you are registered for CloudOS access, you can now access it from the RE desktop, and easily transfer files between CloudOS and the workspace filesystem.
7th February 2024 HPC change
We will be updating to a new HPC in spring.
15th January 2024 How to Guides
Check out the new How-to Guides section for end-to-end guides, code books and task-based tutorials.
1st November 2023 BioMart
Ensembl BioMart is now accessible in the RE, both the web interface and the biomaRt R package.
13th Oct 2023 Updated workflow
Structural Variant 3.0 is a complete re-write of the SV/CNV workflow (current version 2.0.1), from WDL/Cromwell to Nextflow DSL2. The workflow now runs in both RE (Helix/HPC) and CloudRE (CloudOS).