General NHS GMS clinical dataΒΆ
A number of tables in LabKey are common to all participants, both cancer and rare disease participants. These cover data about the participants themselves, the samples and results of bioinformatic analyses.
| Name of Table/Data view | Description |
|---|---|
| participant | Data associated with a patient within the NHS GMS. |
| plated_sample | Data associated with a plated, ready to be sequenced, DNA sample. |
| referral | Data associated with a referral within the NHS GMS. |
| referral_participant | A patient participating in an NHS GMS referral. |
| referral_test | Data associated with a test within an NHS GMS referral. |
| sample | Data associated with a medical sample taken from a patient and submitted to a laboratory for genomic sequencing. |
| genome_file_paths_and_types | Specifies individual genomic files and their folder locations for a given participant. |
| sequencing_report | For each participant, this table provides information on the sequencing of their genome(s) and associated output, as well as the sample type that the sequence is from. |
Last update:
November 27, 2023