Video tutorials¶
Below you will find some instructional videos about using the Research Environment and its tools.
If you do not yet have access to the Research Environment go to Research Network and your access to data to find out how to get an account.
If you have any suggestions for further videos you would like to see, please contact us on ge-servicedesk@genomicsengland.co.uk
If you are viewing this page inside the Research Environment, the videos embedded below will not work.
Instead, please visit this page outside the RE in your web browser at re-docs.genomicsengland.co.uk.
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Introduction to the Research Environment¶
Accessing the TRE¶
Research Environment folder structure¶
Command line¶
Using the command line¶
Labkey¶
Data available in Labkey¶
Working with Labkey tables¶
Finding pathogenic variants in a gene¶
Setting up the RE to use the Labkey API¶
Using the Labkey API in R¶
Using the Labkey API in Python¶
Importing and exporting files with Airlock¶
Import¶
Export¶
Reporting potential diagnoses and contacting clinicians¶
Using the Data Discovery Portal¶
Participant Explorer:¶
How to search with participant IDs¶
How to build a cohort with clinical concepts and participant details¶
How to explore a participant¶
How to compare participants' medical histories¶
How to download data¶
IVA¶
Find a variant by a gene or locus¶
Last update:
November 17, 2023