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Terminal application

The Research Environment runs on Linux. You can access the Terminal by clicking on the application on the Research Environment Desktop. From here you can access the file system and the HPC.

We do not allow you to use directory traversing to find genome files for participants, as you may find genomes of participants who have since withdrawn consent and any requests to export these data via Airlock will be rejected. The best way to find the locations of genome files is using the latest LabKey genome_file_types_and_paths table or file locations on the latest version Participant Explorer, as we know that these files are currently consented for use.

Resources for learning Bash

There are a variety of online resources for learning Bash and Bash scripting: