Genomics England Data¶
You can find the outputs of bioinformatics pipelines and analyses run by Genomics England in LabKey and in the
gel_data_resources folder in the RE filesystem.
You can find details of the data available on the following pages:
- Aggregated variant calls
- Genetic similarity to worldwide populations (ancestry) in the UK Biobank
- De novo variant research dataset
- Variant prioritisation:
- Solved cases (rare disease)
- HLA variants
- Cancer data:
- Long-read sequencing data
gel_data_resources folder contains large files, such as VCFs and JSONs. You can access the
gel_data_resources folder either from the desktop or the HPC. This folder is read-only.
Genomics England data can be found in the
gms folders, which relate to the different projects. Further folders in
gel_data_resources include scripts and workflows.
Within these data folders,
gms, data are categorised into folders by type, then date of release, then further subtypes.
Data that can be easily displayed in tables are available in LabKey.