Genomics England Research EnvironmentΒΆ
ANNOUNCEMENTS
Current data release:
18th November - change to HPC address
The HPC address has changed to doublehelix.helix.prod.aws.gel.ac.
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6 November 2024 - Workflow update
Small Variant v3.1.2 use bcftools merge flag --force-single to allow edge case merge of single file, added in bftools release 1.20
31 October 2024 - Workflow update
Small Variant v3.1.1 improves workflow submission script reporting, and updates configuration profile names
31st October - 100kGP release 19
We have released the latest version of 100kGP data, release 19. 18th October 2024 - Workflow update
Small Variant v3.1.0 uses Nextflow version 24.04.2 with nf-shema@2.0.0 for parameter and samplesheet validation, and command line parameter help
22nd August - GMS release 4
We have released the latest version of GMS data, release 4.
16th July 2024 - HPC documentation
Following a consultation with our researchers, we have improved the HPC documentation, including an introduction to HPCs and detailed guidelines on running jobs.
16th July 2024 - Package update
getSVCNVperGene has been upgraded from the version 0.94 to version 2.0. This new version maintains compatibility with 100kGP data release 15 and below, while now also supporting version 16 and above. Additionally, it introduces compatibility with NHS-GMS data releases.
17th June 2024 - SACT in Participant Explorer
You can now search by cancer drug treatments and view them in medical history in Particpant Explorer
13th June 2024 - Workflow update
Small Variant v3.0.0 is a port to Nextflow DSL2 and uses Nextflow version 23.10
3rd June 2024 - Help prioritise our roadmap
You can now access our roadmap for workflows and scripts, where you can upvote existing plans and add ideas of your own.
23rd May 2024 - Workflow update
Structural Variant v3.1.2 updates bcftools to biocontainers/bcftools:1.20--h8b25389_0
- to use the latest update, edit your submission script as follows:
structural_variant='/pgen_int_data_resources/workflows/rdp_structural_variant/v3.1.2'