IVA project and studies¶
Studies are datasets that you can access in IVA. You will be able to see a breakdown of these studies by clicking on the username tab on the top menu and selecting Projects.
Studies in IVA v2.1.1 - Available data 20 Apr 2021¶
The data corresponds to 100kGP release v10.
| Project name | Study name | Study fqn | Genome Assembly | Number of samples | Number of variants | Aligner | Variant caller |
|---|---|---|---|---|---|---|---|
| 100kGP Genomes Project GRCh37 Germline | Rare Disease Program GRCh37 | 100k_genomes_grch37_germline:RD37 | GRCh37 | 8,154 | 325,284,884 | Illumina iSAAC | Platypus (0.8.1) |
| 100kGP Genomes Project GRCh38 Germline | Rare Disease Program GRCh38 | 100k_genomes_grch38_germline:RD38 | GRCh38 | 61,641 | 596,231,035 | Illumina iSAAC | Platypus (0.8.1) |
| 100kGP Genomes Project GRCh38 Germline | Cancer Program GRCh38 Germline | 100k_genomes_grch38_germline:CG38 | GRCh38 | 15,243 | 369,051,985 | Illumina iSAAC | |
| 100kGP Genomes Project GRCh38 Somatic | Cancer Program GRCh38 Somatic | 100k_genomes_grch38_somatic:CS38 | GRCh38 | 16,353 | 578,659,045 | Illumina iSAAC | Strelka (2.4.7) |