Is it possible to annotate variants within the Research Environment?

Question

I would like to functionally annotate my variants within the Research Environment to determine what impact they have on my genes of interest. For example if a variant causes gene loss-of-function. Is it possible to do this?

Answer

You can functionally annotate variants within the Research Environment using a range of available tools such as VEP, annovar, and SNPEff. We recommend using VEP as it is the most supported of these tools and is kept up-to-date within the Research Environment. You can read more about VEP here: https://www.ensembl.org/info/docs/tools/vep/index.html.

Last updated

This page was last updated on the 31 Jul 2019.